Keywords

Research in context graph, Ricgraph, Ricgraph Explorer, Ricgraph REST API, Data enrichment, Data harvesting, Data linking, Enrichment, Graph, Graph database, Harvest, Harvest data, Harvester, Knowledge graph, Linked data, Metadata, Utrecht University, Visualization

Table of contents Ricgraph documentation

This table of contents has been generated automatically.

• Ricgraph - Research in context graph
  • What is Ricgraph?
  • Motivation
    • Use case for a journalist
    • Use case for a librarian
    • Use case for a researcher
  • Main contributions of Ricgraph
  • Why Ricgraph?
  • Examples
  • Ricgraph in bullet points
  • Next steps
    • Further information about Ricgraph
    • Steps to take if you would like to install Ricgraph and harvest data
    • Steps to take if you would like to use Ricgraph
  • Contact
• Ricgraph as a server on Linux
  • Fast and recommended way to install Ricgraph as a server
  • Run Ricgraph scripts from the command line or as a cronjob
    • Using the Makefile
    • In case you have installed Ricgraph as a server
    • In case you have installed Ricgraph for a single user
  • Use a service unit file to run Ricgraph Explorer and the Ricgraph REST API
  • Use Apache, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine
    • Introduction Apache webserver
    • Installation Apache
    • Post-install steps Apache
  • Use Nginx, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine
    • Introduction Nginx webserver
    • Installation Nginx
    • Post-install steps Nginx
  • How to install Ricgraph and Ricgraph Explorer on SURF Research Cloud
    • Preliminaries
    • Create a SURF Research Cloud workspace
    • Install Ricgraph in a SURF Research Cloud workspace
    • Pause and resume a SURF Research Cloud workspace
    • Access a SURF Research Cloud workspace
  • Steps to take to install Ricgraph as a server by hand
    • Install your graph database backend
    • Create a ricgraph user and group
    • Create a Python virtual environment and install Ricgraph in it
• Ricgraph comparison
  • General overview
  • Extendability
• Ricgraph in a container
  • Notes on the Ricgraph Podman container
  • Install Podman
  • Install and run the Ricgraph Podman container
  • Advanced use of the Ricgraph Podman container
• Implementation details
  • Person identifiers
  • Person-root node in Ricgraph
  • Properties of nodes in Ricgraph
• Ricgraph Explorer
  • How to start Ricgraph Explorer
  • Working with Ricgraph Explorer
    • A usage flow through Ricgraph Explorer
    • Example research questions
  • Home page
  • Search page
  • Person options page
  • Organization options page
  • Results page
  • Browsing Ricgraph
  • Showing a privacy statement or privacy measures document
  • Video Ricgraph Explorer
• Index Ricgraph documentation
• Ricgraph known bugs
  • Error while emptying Ricgraph with Neo4j
    • Solution for Neo4j Community Edition
    • Solution for Neo4j Desktop
• Ricgraph REST API
  • Installation of the Ricgraph REST API
  • Use of the Ricgraph REST API
  • Ricgraph REST API endpoint documentation
  • Generate the Ricgraph REST API documentation page
• Ricgraph - Research in context graph REST API
  • What to find on this page?
  • How to use
  • Technicalities
  • Base URL
  • Endpoints
  • GET /person/search
  • GET /person/all_information
  • GET /person/share_research_results
  • GET /person/collaborating_organizations
  • GET /person/enrich
  • GET /organization/search
  • GET /organization/all_information
  • GET /organization/information_persons_results
  • GET /organization/enrich
  • GET /competence/search
  • GET /competence/all_information
  • GET /broad_search
  • GET /advanced_search
  • GET /get_all_personroot_nodes
  • GET /get_all_neighbor_nodes
  • GET /get_ricgraph_list
• Ricgraph script writing
  • How to make your own harvesting scripts
  • General program structure of a Python script using Ricgraph
  • Structure of a Python script that is harvesting data
  • Function calls for inserting nodes
  • Function call for unifying personal identifiers
  • Function calls to create, read (find), update and delete (CRUD) nodes
  • Function calls to get neighbors of nodes
• Table of contents Ricgraph documentation
• Ricgraph with Memgraph graph database backend
  • Install and start Memgraph
• Install and configure Ricgraph
  • Fast and recommended way to install Ricgraph for a single user
    • You can change to user root
    • You cannot change to user root
  • Requirements for Ricgraph
  • Ricgraph Makefile
  • Ricgraph initialization file
    • Settings for the graph database backend
    • Extending Ricgraph with new properties in the nodes
    • RICGRAPH_NODEADD_MODE
  • Ricgraph on Windows
  • Steps to take to install Ricgraph for a single user by hand
    • Install your graph database backend
    • Download Ricgraph
    • Use a Python virtual environment and install Python requirements
      • Using Python’s venv module
      • Using a Python Integrated development environment (IDE)
• Documentation Ricgraph - Research in context graph
  • What is Ricgraph?
  • What to find on the Documentation website for Ricgraph?
  • Contact
• Tutorial Ricgraph - Research in context graph
  • Ricgraph introduction
  • Motivation
    • Use case for a journalist
    • Use case for a librarian
    • Use case for a researcher
  • Main contributions of Ricgraph
  • Installation guide
  • Harvesting source systems
  • Browsing using Ricgraph Explorer
    • A usage flow through Ricgraph Explorer
    • Example research questions
  • More information
  • Contact
• Ricgraph publications, presentations, use, and mentions
  • Ricgraph publications
  • Ricgraph presentations
  • Ricgraph newsletters
  • Ricgraph projects with students
  • Ricgraph use
  • Ricgraph mentions
  • Arjan Sieverink presents Ricgraph at Pure International Conference 2023
• Ricgraph harvest scripts
  • Introduction to harvest scripts
  • Organization abbreviation
  • Scripts that harvest multiple sources
  • Scripts that harvest a single source
    • Harvest of OpenAlex (harvest_openalex_to_ricgraph)
    • Harvest of Pure (harvest_pure_to_ricgraph)
      • Limit the amount of data to harvest from Pure
      • Pure READ and Pure CRUD API
      • Pure harvesting of projects
    • Harvest of data sets from Yoda-DataCite (harvest_yoda_datacite_to_ricgraph)
    • Harvest of Utrecht University staff pages (harvest_uustaffpages_to_ricgraph)
    • Harvest of software from the Research Software Directory (harvest_rsd_to_ricgraph)
  • Order of running the harvest scripts
  • How to make your own harvesting scripts
• Ricgraph miscellaneous scripts
  • Construct a Ricgraph from a csv file (construct_ricgraph_from_csv)
  • Import nodes and edges from a csv file, raw version (ricgraph_import_raw_from_csv)
  • Export nodes and edges to a csv file, raw version (ricgraph_export_raw_to_csv)
  • Count the number of organizations that contributed to a category (count_organizations_contributed_to_category)
  • Export nodes to a file (export_person_identifiers and export_person_node_properties)
  • Delete personal data from Ricgraph (delete_personal_data)
  • Rename (sub-)organizations in Ricgraph (rename_organizations)
  • Script to enrich persons (enrich_orcids_scopusids)
  • Script to find person identifiers pointing to different persons (find_double_pids)
  • Create a table of contents of the Ricgraph documentation (create_toc_documentation)
  • Create an index of the Ricgraph documentation (create_index_documentation)
  • Create the Ricgraph REST API documentation (convert_openapi_to_mddoc)
• Ricgraph with Neo4j graph database backend
  • Neo4j Community Edition
    • Install and start Neo4j Community Edition
    • Post-install steps Neo4j Community Edition
  • Neo4j Desktop
    • Install Neo4j Desktop
    • Post-install steps Neo4j Desktop
    • Start Neo4j Desktop
    • Neo4j Desktop with Bloom (optional)
      • Install Bloom configuration for Neo4j Desktop
      • Open Bloom
      • Execute queries in Bloom
      • Actions while clicking on a node in Bloom
      • Visualization of nodes in Bloom
  • Dumping, restoring, and emptying the Ricgraph database
    • Create a Neo4j Desktop database dump of Ricgraph
    • Create a Neo4j Community Edition database dump of Ricgraph
    • Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Desktop
    • Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition
    • Restore a Neo4j Community Edition database dump of Ricgraph in Neo4j Community Edition
    • Empty a Neo4j Community Edition database
  • How to reset the Neo4j Community Edition password
  • How to solve an AttributeError: Neo4jDriver object has no attribute executequery