Table of contents Ricgraph documentation

This table of contents has been generated automatically.

• Ricgraph comparison
  • General overview
  • Extendability
• Ricgraph in a container
  • Notes on the Ricgraph Podman container
  • Install Podman
  • Install and run the Ricgraph Podman container
  • Advanced use of the Ricgraph Podman container
• Implementation details
  • Example graphs in Ricgraph
  • Person identifiers
  • Person-root node in Ricgraph
  • Properties of nodes in Ricgraph
  • Conventions for names of (sub-)organizations in Ricgraph
• Ricgraph Explorer
  • How to start Ricgraph Explorer
  • Working with Ricgraph Explorer
    • A usage flow through Ricgraph Explorer
    • Example research questions
  • Home page
  • Search page
  • Person options page
  • Organization options page
  • Results page
  • Browsing Ricgraph
  • Video Ricgraph Explorer
• Index Ricgraph documentation
• Ricgraph known bugs
  • Error while emptying Ricgraph with Neo4j
    • Solution for Neo4j Community Edition
    • Solution for Neo4j Desktop
• Ricgraph REST API
  • Installation of the Ricgraph REST API
  • Use of the Ricgraph REST API
  • Ricgraph REST API endpoint documentation
  • Generate the Ricgraph REST API documentation page
• Ricgraph - Research in context graph REST API
  • What to find on this page?
  • How to use
  • Technicalities
  • Base URL
  • Endpoints
  • GET /person/search
  • GET /person/all_information
  • GET /person/share_researchresults
  • GET /person/collaborating_organizations
  • GET /person/enrich
  • GET /organization/search
  • GET /organization/all_information
  • GET /organization/information_persons_results
  • GET /organization/enrich
  • GET /opensciencelandscape/explorecollaborations
  • GET /competence/search
  • GET /competence/all_information
  • GET /broad_search
  • GET /advanced_search
  • GET /get_all_personroot_nodes
  • GET /get_all_neighbor_nodes
  • GET /get_ricgraph_info
• Ricgraph script writing
  • How to make your own harvesting scripts
  • General program structure of a Python script using Ricgraph
  • Structure of a Python script that is harvesting data
  • Function calls for inserting nodes
  • Function call for unifying personal identifiers
  • Function calls to create, read (find), update and delete (CRUD) nodes
  • Function calls to get neighbors of nodes
• Table of contents Ricgraph documentation
• Ricgraph with Memgraph graph database backend
  • Install and start Memgraph
• Documentation Ricgraph
  • What is Ricgraph?
  • Why Ricgraph is unique
  • Ricgraph videos
  • More information about Ricgraph
  • What to find on the Documentation website for Ricgraph?
  • What NOT to find on this Documentation website?
• Ricgraph harvest scripts
  • Introduction to harvest scripts
  • Organization abbreviation
  • Demo harvest script (multiple_harvest_demo)
  • Scripts that harvest multiple sources
  • Scripts that harvest a single source
    • Harvest of OpenAlex (harvest_openalex_to_ricgraph)
    • Harvest of Pure (harvest_pure_to_ricgraph)
      • Limit the amount of data to harvest from Pure
      • Pure READ and Pure CRUD API
      • Pure harvesting of projects
    • Harvest of data sets from Yoda-DataCite (harvest_yoda_datacite_to_ricgraph)
    • Harvest of Utrecht University staff pages (harvest_uustaffpages_to_ricgraph)
    • Harvest of software from the Research Software Directory (harvest_rsd_to_ricgraph)
  • Order of running the harvest scripts
  • How to make your own harvesting scripts
• Ricgraph miscellaneous scripts
  • Find (sub-)organization collaborations (organization_collaborations_batch)
  • Construct a Ricgraph from a csv file (construct_ricgraph_from_csv)
  • Import nodes and edges from a csv file, raw version (ricgraph_import_raw_from_csv)
  • Export nodes and edges to a csv file, raw version (ricgraph_export_raw_to_csv)
  • Count the number of organizations that contributed to a category (count_organizations_contributed_to_category)
  • Export nodes to a file (export_person_identifiers and export_person_node_properties)
  • Delete personal data from Ricgraph (delete_personal_data)
  • Rename (sub-)organizations in Ricgraph (rename_organizations)
  • Script to enrich persons (enrich_orcids_scopusids)
  • Script to find person identifiers pointing to different persons (find_double_pids)
  • Create a table of contents of the Ricgraph documentation (create_toc_documentation)
  • Create an index of the Ricgraph documentation (create_index_documentation)
  • Create the Ricgraph REST API documentation (convert_openapi_to_mddoc)
• Ricgraph with Neo4j graph database backend
  • Neo4j Community Edition
    • Install and start Neo4j Community Edition
    • Post-install steps Neo4j Community Edition
  • Neo4j Desktop
    • Install Neo4j Desktop
    • Post-install steps Neo4j Desktop
    • Start Neo4j Desktop
    • Neo4j Desktop with Bloom (optional)
      • Install Bloom configuration for Neo4j Desktop
      • Open Bloom
      • Execute queries in Bloom
      • Actions while clicking on a node in Bloom
      • Visualization of nodes in Bloom
  • Dumping, restoring, and emptying the Ricgraph database
    • Create a Neo4j Desktop database dump of Ricgraph
    • Create a Neo4j Community Edition database dump of Ricgraph
    • Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Desktop
    • Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition
    • Restore a Neo4j Community Edition database dump of Ricgraph in Neo4j Community Edition
    • Empty a Neo4j Community Edition database
  • How to reset the Neo4j Community Edition password
  • How to solve an AttributeError: Neo4jDriver object has no attribute executequery
• Ricgraph as a server on Linux
  • Fast and recommended way to install Ricgraph as a server
  • Update Ricgraph as a server
  • Run Ricgraph scripts from the command line or as a cronjob
    • Using the Makefile
    • In case you have installed Ricgraph as a server
    • In case you have installed Ricgraph for a single user
  • Use a service unit file to run Ricgraph Explorer and the Ricgraph REST API
  • Use Apache, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine
    • Introduction Apache webserver
    • Installation Apache
    • Post-install steps Apache
  • Use Nginx, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine
    • Introduction Nginx webserver
    • Installation Nginx
    • Post-install steps Nginx
  • Install Munin monitoring
    • Munin with Apache
    • Munin with Nginx
  • Install AWStats web server log analysis
    • AWStats with Apache
    • AWStats with Nginx
    • Post-install steps AWStats with Nginx
  • How to install Ricgraph and Ricgraph Explorer on SURF Research Cloud
    • Preliminaries
    • Create a SURF Research Cloud workspace
    • Install Ricgraph in a SURF Research Cloud workspace
    • Pause and resume a SURF Research Cloud workspace
    • Access a SURF Research Cloud workspace
  • Steps to take to install Ricgraph as a server by hand
    • Install your graph database backend
    • Create a ricgraph user and group
    • Create a Python virtual environment and install Ricgraph in it
• Install and configure Ricgraph
  • Fast and recommended way to install Ricgraph for a single user
    • You can change to user root
    • You cannot change to user root
  • Update Ricgraph as a single user
  • Requirements for Ricgraph
  • Ricgraph Makefile
  • Ricgraph initialization file
    • Settings for the graph database backend
    • Extending Ricgraph with new properties in the nodes
    • RICGRAPH_NODEADD_MODE
  • Ricgraph on Windows
    • Installation using Windows Subsystem for Linux
  • Steps to take to install Ricgraph for a single user by hand
    • Install your graph database backend
    • Download Ricgraph
    • Use a Python virtual environment and install Python requirements
      • Using Python’s venv module
      • Using a Python Integrated development environment (IDE)
• Ricgraph outreach
  • Ricgraph publications
  • Ricgraph presentations
  • Ricgraph videos
  • Ricgraph newsletters
  • Ricgraph projects with students
  • Ricgraph use
  • Ricgraph mentions
  • Arjan Sieverink presents Ricgraph at Pure International Conference 2023